STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE49874.1Amino acid/peptide transporter; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109:IPR005279; KEGG: pbr:PB2503_08949 di-tripeptide ABC transporter-like protein; PFAM: Oligopeptide transporter; SPTR: Amino acid/peptide transporter subfamily protein; TIGRFAM: Amino acid/peptide transporter; IMG reference gene:2504771355; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial. (528 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.768
AEE51108.1
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6549 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; IMG reference gene:2504772628; PFAM: PA domain; Peptidase family M28.
 
   0.454
AEE49062.1
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_4866 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; IMG reference gene:2504770525; PFAM: PA domain; Peptidase family M28.
 
   0.405
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.