Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AEE49881.1GH3 auxin-responsive promoter; InterPro IPR004993; KEGG: cpi:Cpin_0869 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; IMG reference gene:2504771362; PFAM: GH3 auxin-responsive promoter. (508 aa)    
Predicted Functional Partners:
AEE51437.1
COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: zpr:ZPR_0488 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthase; IMG reference gene:2504772964; PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.742
AEE50594.1
KEGG: cpi:Cpin_6967 DNA-directed RNA polymerase, omega subunit; SPTR: DNA-directed RNA polymerase, omega subunit; IMG reference gene:2504772097; PFAM: RNA polymerase Rpb6.
 
     0.734
AEE50499.1
KEGG: ran:Riean_1147 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772001.
  
     0.709
AEE53389.1
InterPro IPR019734; KEGG: dfe:Dfer_3815 tetratricopeptide domain protein; SPTR: TPR repeat-containing protein; IMG reference gene:2504774963.
  
     0.685
AEE49049.1
KEGG: phe:Phep_3324 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770512.
  
     0.673
AEE53591.1
WbqC-like family protein; InterPro IPR014985; KEGG: bfs:BF0144 hypothetical protein; PFAM: WbqC-like protein family; SPTR: Putative uncharacterized protein; IMG reference gene:2504775166; PFAM: WbqC-like protein family.
  
     0.657
lspA-2
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.634
AEE50396.1
Hypothetical protein; KEGG: coc:Coch_0583 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family; IMG reference gene:2504771892.
 
    0.610
AEE51809.1
KEGG: cpi:Cpin_0535 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504773346.
  
     0.608
AEE52321.1
InterPro IPR003772; KEGG: phe:Phep_3814 protein of unknown function DUF177; PFAM: Protein of unknown function DUF177; SPTR: Putative uncharacterized protein; IMG reference gene:2504773867; PFAM: Uncharacterized ACR, COG1399.
  
     0.604
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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