STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE49897.1KEGG: sli:Slin_5143 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504771378. (154 aa)    
Predicted Functional Partners:
AEE49895.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: mtt:Ftrac_1243 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504771376; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
    0.834
AEE49896.1
Hypothetical protein; IMG reference gene:2504771377.
       0.773
AEE48500.1
KEGG: sli:Slin_1067 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504769947; PFAM: DinB family.
  
     0.688
AEE50970.1
Domain of unknown function DUF1801; InterPro IPR014922; KEGG: lbf:LBF_0452 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: Putative uncharacterized protein; IMG reference gene:2504772488; PFAM: Domain of unknown function (DU1801).
  
     0.681
AEE54099.1
KEGG: fps:FP1584 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504775686; PFAM: Protein of unknown function (DUF1569).
  
     0.579
AEE47918.1
COGs: COG5337 Spore coat assembly protein; InterPro IPR014867; KEGG: gau:GAU_1784 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: Putative uncharacterized protein; IMG reference gene:2504769353; PFAM: CotH protein.
  
     0.518
AEE48374.1
KEGG: sli:Slin_1558 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504769820.
 
   
 0.516
AEE53874.1
KEGG: mtt:Ftrac_1988 hypothetical protein; SPTR: Lipoprotein, putative; IMG reference gene:2504775453.
  
     0.511
AEE50225.1
Methionine sulfoxide reductase A; InterPro IPR002569; KEGG: sal:Sala_0088 hypothetical protein; PFAM: Peptide methionine sulphoxide reductase MsrA; SPTR: Putative uncharacterized protein; IMG reference gene:2504771717; PFAM: Peptide methionine sulfoxide reductase.
  
     0.456
AEE54054.1
KEGG: chu:CHU_1634 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504775641.
  
     0.414
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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