STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE51068.1Rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: lby:Lbys_0103 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin; IMG reference gene:2504772588; PFAM: Rhodanese-like domain. (120 aa)    
Predicted Functional Partners:
AEE50261.1
Rhodanese-like protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: cpi:Cpin_5944 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; IMG reference gene:2504771754; PFAM: Rhodanese-like domain.
  
     0.695
AEE51069.1
KEGG: fjo:Fjoh_2886 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772589.
  
    0.579
AEE51067.1
InterPro IPR019734:IPR001440:IPR013105; KEGG: sus:Acid_0104 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein; IMG reference gene:2504772587; PFAM: Tetratricopeptide repeat.
       0.504
ybeY
Metalloprotease ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.502
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.499
AEE49844.1
Rhodanese-like protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: sli:Slin_6177 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase superfamily protein; IMG reference gene:2504771320; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
 
 
 0.492
AEE50218.1
Rhodanese-like protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: mtt:Ftrac_3106 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; IMG reference gene:2504771709; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
 
 
 0.481
rplQ
COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: fba:FIC_01994 LSU ribosomal protein L17p; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; IMG reference gene:2504774161; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
   0.472
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.464
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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