Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AEE51418.1KEGG: dfe:Dfer_5078 hypothetical protein; SPTR: Conserved membrane protein YdzA; IMG reference gene:2504772945; TIGRFAM: integral membrane protein. (99 aa)    
Predicted Functional Partners:
AEE51417.1
KEGG: fjo:Fjoh_2548 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772944.
 
     0.767
AEE51416.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0291 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Probable IolI protein; IMG reference gene:2504772943; PFAM: Xylose isomerase-like TIM barrel.
  
    0.467
AEE52712.1
Protein of unknown function DUF420; COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: cpi:Cpin_0516 protein of unknown function DUF420; PFAM: Protein of unknown function DUF420; SPTR: YozB; IMG reference gene:2504774277; PFAM: Protein of unknown function (DUF420).
  
     0.415
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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