Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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xerC-2Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (297 aa)    
Predicted Functional Partners:
rpmE2
COGs: COG0254 Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: cpi:Cpin_6211 ribosomal protein L31; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: Ribosomal protein L31; IMG reference gene:2504771786; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31.
  
 
 
 0.749
rpsU
HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: coc:Coch_0829 30S ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; IMG reference gene:2504771891; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.715
AEE49742.1
Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: cpi:Cpin_6265 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell divisionFtsK/SpoIIIE; IMG reference gene:2504771218; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
 
   
 0.689
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.685
rpmI
HAMAP: Ribosomal protein L35; InterPro IPR001706; KEGG: fjo:Fjoh_0026 50S ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; IMG reference gene:2504774556; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.682
AEE52405.1
Ribosomal subunit interface protein; InterPro IPR003489; KEGG: coc:Coch_1557 putative sigma 54 modulation protein/ribosomal protein S30EA; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: Ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; IMG reference gene:2504773953; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
    0.677
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
 
 0.657
rpsI
COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: dfe:Dfer_3496 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; IMG reference gene:2504772100; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.656
rpmG
HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33 Rpl33; TIGRFAM: Ribosomal protein L33; IMG reference gene:2504774209; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.655
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.654
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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