Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEE52521.1InterPro IPR010432; KEGG: pjd:Pjdr2_5285 RDD domain containing protein; PFAM: RDD; SPTR: RDD domain containing protein; IMG reference gene:2504774078; PFAM: RDD family. (184 aa)    
Predicted Functional Partners:
AEE52519.1
WGR domain-containing protein; COGs: COG3831 conserved hypothetical protein; InterPro IPR008893; KEGG: fjo:Fjoh_4733 WGR domain-containing protein; PFAM: WGR; SMART: WGR; SPTR: WGR domain protein; IMG reference gene:2504774076; PFAM: WGR domain.
       0.678
AEE52520.1
InterPro IPR007527; KEGG: fjo:Fjoh_4732 zinc finger SWIM domain-containing protein; SPTR: Zinc finger, SWIM domain protein; IMG reference gene:2504774077; PFAM: SWIM zinc finger.
       0.678
AEE51697.1
SMC domain protein; InterPro IPR003395; KEGG: cpi:Cpin_0105 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; IMG reference gene:2504773229.
  
     0.571
AEE51825.1
KEGG: kse:Ksed_14170 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504773362.
  
     0.541
AEE50636.1
InterPro IPR018592; KEGG: cpi:Cpin_5105 hypothetical protein; PFAM: Domain of unknown function DUF2024; SPTR: Putative uncharacterized protein; IMG reference gene:2504772139; PFAM: Domain of unknown function (DUF2024).
  
     0.476
AEE51167.1
KEGG: pen:PSEEN4434 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772688; PFAM: Metallo-beta-lactamase superfamily.
  
     0.470
AEE52518.1
Transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fjo:Fjoh_4447 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; IMG reference gene:2504774075; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain.
  
    0.465
AEE48194.1
RNA-binding S4 domain protein; COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: aai:AARI_26630 S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: Heat shock protein Hsp15; IMG reference gene:2504769637; PFAM: S4 domain.
  
    0.456
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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