Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEE52841.1RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284; KEGG: sli:Slin_1208 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: Sigma-70 region 2 domain protein; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504774409; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (200 aa)    
Predicted Functional Partners:
AEE52842.1
KEGG: sli:Slin_2965 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504774410.
       0.773
AEE51832.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_1208 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504773369; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.762
AEE52840.1
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR001440:IPR019734; KEGG: ter:Tery_0977 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat; IMG reference gene:2504774408; PFAM: Tetratricopeptide repeat.
 
    0.715
AEE53209.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627; KEGG: mtt:Ftrac_3727 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; SPTR: Putative DNA-directed RNA polymerase specialized sigma subunit; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504774782; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.701
AEE50589.1
InterPro IPR014284; KEGG: phe:Phep_2931 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504772092; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.682
AEE53811.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284; KEGG: lby:Lbys_1636 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase sigma-70 factor, ECF subfamily, putative; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504775389; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.635
AEE50887.1
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR019734:IPR001440; KEGG: fjo:Fjoh_1271 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Uncharacterized protein; IMG reference gene:2504772398.
 
    0.611
AEE52294.1
KEGG: phe:Phep_3781 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504773840.
  
     0.566
AEE50873.1
KEGG: dfe:Dfer_3773 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772384.
  
     0.563
AEE52448.1
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR019734:IPR001440; KEGG: ter:Tery_3497 peptidase-like; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat domain protein; IMG reference gene:2504774004.
 
    0.544
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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