STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AEE53314.1Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dfe:Dfer_2184 transcriptional regulator, BadM/Rrf2 family; PFAM: Transcriptional regulator, Rrf2; SPTR: Possible transcription regulator; TIGRFAM: Transcriptional regulator, Rrf2; IMG reference gene:2504774887; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein. (138 aa)    
Predicted Functional Partners:
AEE53315.1
KEGG: mtt:Ftrac_2707 cytochrome c class I; SPTR: Cytochrome c class I; IMG reference gene:2504774888; PFAM: Cytochrome c.
 
  
 0.788
iscS
Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
  
 0.684
AEE53631.1
COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: cpi:Cpin_1845 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; IMG reference gene:2504775206; PFAM: Aminotransferase class-V.
  
  
 0.684
AEE51305.1
Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: fjo:Fjoh_1888 BadM/Rrf2 family transcriptional regulator; PFAM: Transcriptional regulator, Rrf2; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcriptional regulator, Rrf2; IMG reference gene:2504772830; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein.
  
     0.681
AEE53312.1
COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429; KEGG: fba:FIC_02107 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous oxide reductase apoprotein; IMG reference gene:2504774885; PFAM: Cytochrome C oxidase subunit II, periplasmic domain.
 
   
 0.667
AEE53307.1
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
  
 0.665
AEE53316.1
KEGG: fjo:Fjoh_2415 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504774889.
 
  
 0.640
AEE47924.1
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR003468:IPR004677; KEGG: mtt:Ftrac_1616 cytochrome c oxidase, cbb3-type, subunit I; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome c oxidase, cbb3-type; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monohaem subunit/FixO; IMG reference gene:2504769359; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; [...]
  
  
 0.632
AEE53313.1
beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: lbf:LBF_0373 fasciclin domain-containing protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504774886; PFAM: Fasciclin domain.
       0.589
AEE53311.1
KEGG: dfe:Dfer_0694 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504774884; PFAM: NosL.
 
   
 0.543
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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