STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLZ53363.1TIGR02679 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
OLZ53364.1
TIGR02680 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.961
OLZ53801.1
TIGR02678 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
OLZ53365.1
TIGR02677 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
OLZ53355.1
TIGR02680 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
OLZ53357.1
TIGR02677 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.741
OLZ53356.1
TIGR02678 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.720
OLZ53366.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.510
OLZ46229.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
OLZ44155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.448
OLZ43680.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
Your Current Organism:
Amycolatopsis coloradensis
NCBI taxonomy Id: 76021
Other names: A. coloradensis, ATCC 53629, Amycolatopsis coloradoensis, DSM 44225, IFO 15804, IMSNU 22096, JCM 9869, NBRC 15804, NRRL 3218
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.