STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLZ52559.1Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)    
Predicted Functional Partners:
OLZ45288.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.982
OLZ50443.1
PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.858
OLZ48355.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.858
OLZ52581.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.825
OLZ47698.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.825
OLZ56483.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
  
  0.799
OLZ53841.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.789
OLZ45748.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.783
OLZ43823.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.783
OLZ52560.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Amycolatopsis coloradensis
NCBI taxonomy Id: 76021
Other names: A. coloradensis, ATCC 53629, Amycolatopsis coloradoensis, DSM 44225, IFO 15804, IMSNU 22096, JCM 9869, NBRC 15804, NRRL 3218
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.