STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BS329_17695Alkaline ceramidase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
OLZ51081.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
OLZ51025.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.761
OLZ53338.1
Cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.760
OLZ48419.1
Cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.755
OLZ49443.1
Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.754
OLZ56410.1
Cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.753
OLZ47301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.752
OLZ50527.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.736
OLZ49251.1
2-phospho-L-lactate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.711
OLZ57143.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
Your Current Organism:
Amycolatopsis coloradensis
NCBI taxonomy Id: 76021
Other names: A. coloradensis, ATCC 53629, Amycolatopsis coloradoensis, DSM 44225, IFO 15804, IMSNU 22096, JCM 9869, NBRC 15804, NRRL 3218
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.