STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLZ48375.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
OLZ51464.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.775
OLZ45650.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.774
OLZ47942.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.767
OLZ43698.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
OLZ55474.1
Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.614
OLZ51667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.606
OLZ51731.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
OLZ55369.1
S9 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
OLZ45779.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
OLZ51735.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
Your Current Organism:
Amycolatopsis coloradensis
NCBI taxonomy Id: 76021
Other names: A. coloradensis, ATCC 53629, Amycolatopsis coloradoensis, DSM 44225, IFO 15804, IMSNU 22096, JCM 9869, NBRC 15804, NRRL 3218
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.