STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG13994.1N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Copper amine oxidase-like, N-terminal; SH3, type 3; KEGG: pth:PTH_0786 hypothetical protein; SMART: Cell wall hydrolase/autolysin, catalytic; Bacterial SH3-like region. (602 aa)    
Predicted Functional Partners:
AEG15398.1
NLP/P60 protein; KEGG: chy:CHY_0674 putative cell-wall associated endopeptidase; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
 
  
 0.747
AEG14099.1
Rhomboid family protein; PFAM: Peptidase S54, rhomboid; KEGG: tjr:TherJR_1011 rhomboid family protein.
  
   0.708
AEG13995.1
PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: pth:PTH_0787 glutamate racemase.
     
 0.686
AEG15434.1
CBS domain containing protein; KEGG: drm:Dred_1131 polynucleotide adenylyltransferase region; PFAM: Cystathionine beta-synthase, core; Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; Polynucleotide adenylyltransferase region; SMART: Cystathionine beta-synthase, core.
  
 
 0.665
AEG13734.1
ErfK/YbiS/YcfS/YnhG family protein; KEGG: pth:PTH_0095 hypothetical protein; PFAM: YkuD domain; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
     
 0.638
AEG15919.1
Competence/damage-inducible protein CinA; KEGG: pth:PTH_1300 competence damage-inducible protein A; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding.
 
   
 0.620
AEG14733.1
SMART: PASTA; TIGRFAM: Stage V sporulation protein D; KEGG: drm:Dred_0669 stage V sporulation protein D; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA.
 
  
 0.615
AEG14000.1
Nucleoside-triphosphatase rdgB; PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: pth:PTH_0792 nucleoside-triphosphatase.
 
     0.606
AEG13998.1
KEGG: pth:PTH_0790 metal-dependent hydrolases.
 
 
   0.605
AEG15899.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; KEGG: pth:PTH_1867 cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA.
 
  
 0.603
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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