STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14035.1KEGG: drm:Dred_2549 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like; Helix-hairpin-helix motif. (231 aa)    
Predicted Functional Partners:
AEG14037.1
KEGG: pth:PTH_0818 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC.
  
  
 0.925
AEG14034.1
TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: dae:Dtox_3341 maf protein; PFAM: Maf-like protein.
  
  
 0.920
AEG14036.1
KEGG: pth:PTH_0817 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl.
  
  
 0.856
AEG16839.1
PFAM: Phosphoribosyltransferase; KEGG: pth:PTH_2756 amidophosphoribosyltransferases.
 
    0.717
AEG14038.1
TIGRFAM: Cell shape-determining protein MreD; KEGG: drm:Dred_2546 hypothetical protein.
  
  
 0.633
AEG14039.1
TIGRFAM: Penicillin-binding protein 2; KEGG: drm:Dred_2545 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
       0.614
AEG14033.1
KEGG: pth:PTH_0814 hypothetical protein.
       0.592
AEG16252.1
KEGG: pth:PTH_0857 hydrolase; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
  
 0.528
AEG14916.1
TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: pth:PTH_1342 DNA mismatch repair protein; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like.
 
   
 0.512
AEG15919.1
Competence/damage-inducible protein CinA; KEGG: pth:PTH_1300 competence damage-inducible protein A; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding.
     
 0.493
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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