STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14049.1TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: drm:Dred_2535 ribosomal protein L21; PFAM: Ribosomal protein L21. (103 aa)    
Predicted Functional Partners:
rpmA
TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: pth:PTH_0831 50S ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.999
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.997
AEG15683.1
TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: pth:PTH_1718 50S ribosomal protein L19; PFAM: Ribosomal protein L19.
 
 
 0.997
AEG15688.1
TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: drm:Dred_2055 ribosomal protein S16; PFAM: Ribosomal protein S16.
 
 
 0.997
AEG16518.1
PFAM: Ribosomal protein S9; KEGG: pth:PTH_0357 30S ribosomal protein S9.
 
 
 0.997
AEG16542.1
TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: pth:PTH_0331 50S ribosomal protein L24; SMART: KOW.
 
 
 0.997
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
 0.997
AEG16564.1
KEGG: pth:PTH_0307 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1.
  
 
 0.997
AEG14832.1
TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: dae:Dtox_1163 50S ribosomal protein L28; PFAM: Ribosomal protein L28.
  
 
 0.996
AEG15836.1
TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: dau:Daud_0637 50S ribosomal protein L32; PFAM: Ribosomal protein L32p.
  
 
 0.996
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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