STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14280.1TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: pth:PTH_1031 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein. (339 aa)    
Predicted Functional Partners:
AEG14281.1
PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: pth:PTH_1032 queuine tRNA-ribosyltransferase.
  
 0.998
AEG14276.1
SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: pth:PTH_1027 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal.
 
  
 0.931
AEG14277.1
PFAM: Protein of unknown function DUF208; KEGG: dae:Dtox_1116 protein of unknown function DUF208.
   
 0.931
AEG14275.1
TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: tjr:TherJR_1181 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal.
  
  
 0.873
AEG14583.1
PFAM: Glucose-inhibited division protein A-related; TIGRFAM: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase, TrmFO; HAMAP: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO; KEGG: adg:Adeg_0573 tRNA (uracil-5-)-methyltransferase Gid.
 
  
 0.804
AEG14278.1
KEGG: mta:Moth_1699 hypothetical protein.
  
    0.802
AEG14279.1
SpoIID/LytB domain protein; KEGG: pth:PTH_1030 sporulation protein and related proteins; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal.
       0.797
AEG14282.1
KEGG: pth:PTH_1033 preprotein translocase subunit YajC; TIGRFAM: YajC; PFAM: YajC.
     
 0.786
AEG14898.1
N utilization substance protein B-like protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: pth:PTH_1788 tRNA and rRNA cytosine-C5-methylases; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44.
  
  
 0.733
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.676
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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