STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14722.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: pth:PTH_1876 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal. (404 aa)    
Predicted Functional Partners:
AEG14733.1
SMART: PASTA; TIGRFAM: Stage V sporulation protein D; KEGG: drm:Dred_0669 stage V sporulation protein D; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA.
 
 0.688
AEG14039.1
TIGRFAM: Penicillin-binding protein 2; KEGG: drm:Dred_2545 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
 
 
 0.612
AEG14904.1
Peptidoglycan glycosyltransferase; KEGG: pth:PTH_1782 cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
 
 
 0.611
AEG15573.1
KEGG: drm:Dred_0902 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
 
 
 0.611
AEG15039.1
TIGRFAM: Penicillin-binding protein 1A; KEGG: dae:Dtox_1300 penicillin-binding protein, 1A family; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
  
 
 0.577
AEG14723.1
Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: pth:PTH_1875 Fe2+/Zn2+ uptake regulation proteins.
       0.572
AEG14267.1
TIGRFAM: Penicillin-binding protein 1A; KEGG: pth:PTH_1935 membrane carboxypeptidase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
     
 0.555
AEG15426.1
PFAM: Nucleoside recognition; KEGG: pth:PTH_1640 hypothetical protein.
  
  
 0.511
AEG14721.1
Hypothetical protein.
       0.500
AEG15427.1
PFAM: Nucleoside recognition; KEGG: dae:Dtox_2093 nucleoside recognition domain protein.
  
  
 0.481
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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