STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14827.1TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: pth:PTH_1761 pyrimidine reductase and pyrimidine deaminase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding. (391 aa)    
Predicted Functional Partners:
AEG14828.1
Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; KEGG: pth:PTH_1760 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.
  
 0.999
AEG14829.1
TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; HAMAP: GTP cyclohydrolase-2; KEGG: pth:PTH_1759 GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II.
 0.999
AEG14830.1
TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: pth:PTH_1758 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase.
 
 0.999
AEG15361.1
PFAM: Flagellar protein FlaG protein; KEGG: pth:PTH_2093 hypothetical protein.
   
   0.926
AEG15383.1
KEGG: dae:Dtox_0668 flagellar protein FlaG protein.
   
   0.926
AEG14057.1
PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: pth:PTH_0835 nicotinic acid mononucleotide adenylyltransferase.
  
  
 0.916
AEG14755.1
Transcriptional repressor nrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: pth:PTH_1843 transcriptional regulator NrdR; PFAM: ATP-cone.
 
  
 0.903
AEG16064.1
Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: pth:PTH_1273 FAD synthase; PFAM: FAD synthetase; Riboflavin kinase.
 
  
 0.883
AEG14162.1
TIGRFAM: Thiamine-monophosphate kinase; KEGG: drm:Dred_2889 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal.
    
 0.879
AEG14898.1
N utilization substance protein B-like protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: pth:PTH_1788 tRNA and rRNA cytosine-C5-methylases; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44.
  
  
 0.871
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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