STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG14984.1TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: dae:Dtox_3665 DNA binding domain protein, excisionase family. (76 aa)    
Predicted Functional Partners:
AEG14986.1
KEGG: dae:Dtox_3701 P4 family phage/plasmid primase; TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; DNA primase/nucleoside triphosphatase, C-terminal.
     
 0.815
AEG14983.1
Helix-turn-helix domain protein; KEGG: ava:Ava_1184 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.796
AEG14985.1
Hypothetical protein.
       0.645
AEG14981.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dae:Dtox_3662 integrase family protein.
     
 0.573
AEG14982.1
Hypothetical protein.
       0.506
AEG14713.1
Site-specific DNA-methyltransferase (adenine-specific); PFAM: MT-A70; ParB-like nuclease; KEGG: oan:Oant_2318 MT-A70 family protein; SMART: ParB-like nuclease.
     
 0.439
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.