STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG15241.1KEGG: dae:Dtox_0805 RNA methyltransferase, TrmH family, group 2; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU. (153 aa)    
Predicted Functional Partners:
AEG16779.1
TIGRFAM: Triosephosphate isomerase; KEGG: dau:Daud_0304 triose-phosphate isomerase; PFAM: Triosephosphate isomerase.
      0.692
AEG15240.1
KEGG: dae:Dtox_0806 ATPase associated with various cellular activities AAA_5; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core.
       0.533
AEG15239.1
PFAM: vWA containing CoxE-like; KEGG: dae:Dtox_0807 VWA containing CoxE family protein.
       0.514
AEG14020.1
TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: pth:PTH_0803 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial.
 
    0.509
AEG16975.1
KEGG: chy:CHY_0058 hypothetical protein; HAMAP: Ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted.
  
   
 0.505
AEG14898.1
N utilization substance protein B-like protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: pth:PTH_1788 tRNA and rRNA cytosine-C5-methylases; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44.
  
  
 0.481
AEG16084.1
TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: pth:PTH_1255 ribosome recycling factor; PFAM: Ribosome recycling factor.
   
    0.473
AEG14736.1
TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: pth:PTH_1864 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site.
  
    0.426
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.