STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG16374.1PFAM: Pseudouridine synthase, TruD; KEGG: mta:Moth_1745 pseudouridylate synthase. (386 aa)    
Predicted Functional Partners:
AEG14860.1
TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: pth:PTH_1818 pseudouridylate synthase; SMART: RNA-binding S4.
    
 
 0.929
AEG15681.1
KEGG: pth:PTH_1716 GTPase; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related.
   
   0.919
AEG14049.1
TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: drm:Dred_2535 ribosomal protein L21; PFAM: Ribosomal protein L21.
  
   0.909
rplQ
TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: drm:Dred_0244 50S ribosomal protein L17; PFAM: Ribosomal protein L17.
   
   0.909
AEG17043.1
TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: pth:PTH_2917 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related.
   
   0.905
AEG16182.1
SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: pth:PTH_0879 DnaJ-class molecular chaperone; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region.
   
   0.903
AEG14025.1
TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: pth:PTH_0808 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related.
    
   0.902
AEG14062.1
Iojap-like protein; KEGG: pth:PTH_0837 hypothetical protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein.
    
   0.902
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.902
AEG16542.1
TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: pth:PTH_0331 50S ribosomal protein L24; SMART: KOW.
   
   0.900
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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