STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG16686.1TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: dae:Dtox_0250 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic. (157 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.975
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 0.955
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.945
AEG14889.1
TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: pth:PTH_1794 DNA-directed RNA polymerase, subunit K/omega; PFAM: RNA polymerase Rpb6.
   
 
 0.944
AEG16685.1
PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: pth:PTH_0263 lysyl-tRNA synthetase.
       0.828
AEG16060.1
Polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: pth:PTH_1275 polynucleotide phosphorylase/polyadenylase.
  
  
 0.686
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
  
 0.658
AEG16061.1
KEGG: pth:PTH_1274 ribosomal protein S15P/S13E; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15.
  
    0.656
AEG14898.1
N utilization substance protein B-like protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: pth:PTH_1788 tRNA and rRNA cytosine-C5-methylases; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44.
  
  
 0.616
AEG16687.1
PFAM: Saccharopine dehydrogenase; KEGG: pth:PTH_0261 dehydrogenase.
       0.600
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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