STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG16694.1KEGG: tra:Trad_2717 hypothetical protein. (1104 aa)    
Predicted Functional Partners:
AEG16697.1
KEGG: ttj:TTHA1020 hypothetical protein; PFAM: DNA/RNA helicase, C-terminal; Helix-turn-helix type 3; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; Helix-turn-helix type 3.
 
     0.899
AEG16695.1
PFAM: Protein of unknown function DUF1156; DNA methylase N-4/N-6; KEGG: tra:Trad_2714 hypothetical protein.
 
     0.891
AEG13743.1
PFAM: Protein of unknown function DUF1156; DNA methylase N-4/N-6; KEGG: bts:Btus_2855 protein of unknown function DUF1156.
 
     0.779
AEG15867.1
KEGG: adg:Adeg_1345 helicase domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
 
     0.755
AEG13744.1
KEGG: bts:Btus_2854 helicase domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
 
     0.741
AEG14392.1
PFAM: DNA methylase N-4/N-6; KEGG: cyh:Cyan8802_4077 hypothetical protein.
  
     0.631
AEG14072.1
KEGG: dau:Daud_1820 CRISPR-associated RAMP Cmr4 family protein family protein; TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: Protein of unknown function DUF324.
  
     0.529
AEG15866.1
KEGG: rrs:RoseRS_1882 hypothetical protein.
  
     0.528
AEG16696.1
Hypothetical protein.
       0.497
AEG14182.1
PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: ami:Amir_0590 phosphoadenosine phosphosulfate reductase.
  
     0.488
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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