Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEG16697.1KEGG: ttj:TTHA1020 hypothetical protein; PFAM: DNA/RNA helicase, C-terminal; Helix-turn-helix type 3; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; Helix-turn-helix type 3. (1210 aa)    
Predicted Functional Partners:
AEG15867.1
KEGG: adg:Adeg_1345 helicase domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
 
0.961
AEG16695.1
PFAM: Protein of unknown function DUF1156; DNA methylase N-4/N-6; KEGG: tra:Trad_2714 hypothetical protein.
 
     0.951
rpmC
KEGG: pth:PTH_0328 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.904
AEG16551.1
PFAM: Ribosomal protein L25/L23; KEGG: pth:PTH_0322 50S ribosomal protein L23.
   
   0.903
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.900
AEG16694.1
KEGG: tra:Trad_2717 hypothetical protein.
 
     0.894
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
   0.887
AEG16061.1
KEGG: pth:PTH_1274 ribosomal protein S15P/S13E; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15.
  
   0.864
AEG16537.1
KEGG: pth:PTH_0335 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5.
   
   0.862
AEG16552.1
PFAM: Ribosomal protein L4/L1e; KEGG: pth:PTH_0321 50S ribosomal protein L4.
   
 
 0.862
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.