STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG16928.1Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: dae:Dtox_4185 ferric uptake regulator, Fur family. (141 aa)    
Predicted Functional Partners:
AEG16926.1
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dae:Dtox_4183 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
  
 0.821
AEG16927.1
ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: slp:Slip_1745 periplasmic solute binding protein.
 
  
 0.736
AEG16925.1
ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: dae:Dtox_4182 ABC-3 protein.
 
  
 0.724
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.720
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.715
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.607
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.606
AEG14889.1
TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: pth:PTH_1794 DNA-directed RNA polymerase, subunit K/omega; PFAM: RNA polymerase Rpb6.
   
 
 0.594
AEG15244.1
CoA-binding domain protein; PFAM: CoA-binding; KEGG: dae:Dtox_0803 CoA-binding domain protein.
  
    0.548
AEG16929.1
PFAM: Nickel/cobalt transporter, high-affinity; KEGG: drm:Dred_3167 high-affinity nickel-transporter.
       0.536
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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