STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG17024.1PFAM: Protein of unknown function DUF2232, membrane; KEGG: drm:Dred_3304 membrane protein-like protein. (327 aa)    
Predicted Functional Partners:
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.972
AEG17023.1
TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: pth:PTH_2887 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal.
  
    0.960
AEG17025.1
KEGG: pth:PTH_2889 hypothetical protein.
       0.819
AEG17028.1
TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: pth:PTH_2892 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like.
  
    0.774
AEG16563.1
KEGG: pth:PTH_0308 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10.
   
    0.748
AEG16086.1
TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: tjr:TherJR_1357 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal.
   
    0.742
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.739
AEG16564.1
KEGG: pth:PTH_0307 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1.
   
    0.736
AEG17022.1
Sigma 54 interacting domain protein; SMART: ATPase, AAA+ type, core; TIGRFAM: Sporulation protease LonC; KEGG: pth:PTH_2886 ATP-dependent protease; PFAM: Peptidase S16, lon C-terminal; RNA polymerase sigma factor 54, interaction.
       0.719
AEG16518.1
PFAM: Ribosomal protein S9; KEGG: pth:PTH_0357 30S ribosomal protein S9.
   
    0.715
Your Current Organism:
Desulfofundulus kuznetsovii
NCBI taxonomy Id: 760568
Other names: D. kuznetsovii DSM 6115, Desulfofundulus kuznetsovii DSM 6115, Desulfotomaculum kuznetsovii 17, Desulfotomaculum kuznetsovii DSM 6115
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