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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA1174Conserved hypothetical protein. (368 aa)    
Predicted Functional Partners:
ebA1173
Conserved hypothetical protein.
 
     0.951
gumC
Exopolysaccharide biosynthesis protein.
  
 
 0.927
ebA4249
Polysaccharide chain length determinant protein.
 
 
 0.896
ebA4277
Conserved hypothetical membrane protein; potential lipid A core-O-antigen ligase.
 
  
 0.841
ebA4250
Probable exopolysaccharide biosynthesis protein.
 
 
 0.829
wcaJ
Colanic biosynthesis UDP-glucose lipid carrier transferase.
  
  
 0.816
ebA4180
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.797
sthA
Putative glycosyltransferase.
 
  
 0.794
ebA36
Conserved hypothetical protein.
 
  
 0.792
ebA4262
Glycosyl transferase group 1.
 
  
 0.784
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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