Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ebA1239General (Type II) secretion pathway (GSP) D protein. (771 aa)    
Predicted Functional Partners:
ebA1241
General secretion pathway gspG related transmembrane protein.
 
  
 0.953
ebA1245
Hypothetical protein.
 
   
 0.950
ebB36
Probable secretion protein.
 
   
 0.946
ebA1234
Hypothetical protein.
 
 
 0.945
gspD2
General secretory pathway protein D.
 
  
0.916
gspD
General (Type II) secretion pathway (GSP) D protein.
    
0.911
ebA1237
Hypothetical protein.
 
     0.900
ebA1229
Hypothetical protein.
 
     0.896
pilN
Type IV fimbrial biogenesis protein PilN.
 
 
 0.896
ebD34
Hypothetical protein.
 
     0.874
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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