STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA1239General (Type II) secretion pathway (GSP) D protein. (771 aa)    
Predicted Functional Partners:
ebA1241
General secretion pathway gspG related transmembrane protein.
 
  
 0.952
ebA1245
Hypothetical protein.
 
   
 0.949
ebB36
Probable secretion protein.
 
   
 0.946
ebA1234
Hypothetical protein.
 
 
 0.945
gspD2
General secretory pathway protein D.
 
  
0.918
gspD
General (Type II) secretion pathway (GSP) D protein.
    
0.913
ebA1237
Hypothetical protein.
 
     0.899
ebA1229
Hypothetical protein.
 
     0.895
pilN
Type IV fimbrial biogenesis protein PilN.
 
 
 0.891
pilP
Type IV fimbrial biogenesis protein PilP.
  
 
 0.878
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.