STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilU2Twitching mobility protein pilU. (409 aa)    
Predicted Functional Partners:
pilC
Type IV fimbrial biogenesis protein,PilC.
 
   
 0.788
pilM
Type IV fimbrial biogenesis protein PilM.
  
  
 0.781
pilD
Type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.776
gspF
General secretion pathway protein F.
 
   
 0.762
pulF
Bacterial type II secretion system protein.
 
   
 0.755
gspF2
General secretion pathway protein F.
 
   
 0.712
pilQ
Fimbrial type-IV assembly protein PilQ.
  
  
 0.682
pilO
Fimbrial type-IV assembly protein PilO.
 
  
 0.606
pilN
Type IV fimbrial biogenesis protein PilN.
  
  
 0.578
ebA2958
Conserved hypothetical protein.
  
    0.564
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.