STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagIGentisate 1,2-dioxygenase. (345 aa)    
Predicted Functional Partners:
nagL
Maleylpyruvate isomerase.
 
  
 0.972
nagI-2
Putative gentisate 1,2-dioxygenase oxidoreductase protein.
  
  
 
0.925
s5h
Putative salicylate 5-hydroxylase.
 
   
 0.885
nagK
Fumarylpyruvate hydrolase.
 
   
 0.790
lysR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.656
ebA2758
Conserved hypothetical protein.
  
     0.653
bzdR
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
     0.635
boxR
Putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
     0.618
boxB
Benzoyl-CoA oxygenase component B.
  
     0.611
ebA5317
Long-chain-fatty-acid-CoA ligase (EC 6.2.1.3).
  
     0.601
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (26%) [HD]