Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA1513Hypothetical protein. (292 aa)    
Predicted Functional Partners:
ebA1514
Predicted Coenzyme F420-reducing hydrogenase, beta subunit.
       0.757
ebA1515
Hypothetical protein.
       0.690
ebA1516
Probable: Putative GlcNAc transferase.
       0.690
ebA1517
Predicted Glycosyltransferase, RfaG.
       0.690
rffG
DTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.667
ebA1519
Probable acetylase.
       0.448
ebA1520
Hypothetical protein.
       0.408
ebD36
Conserved hypothetical protein, similar to virulence-associated protein VapC.
       0.408
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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