STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral (Type II) secretion pathway (GSP) D protein. (769 aa)    
Predicted Functional Partners:
gspJ
General secretion pathway protein J.
 
  
 0.955
gspG
General secretion pathway protein G.
 
  
 0.955
gspK
General secretory pathway protein K.
 
   
 0.952
gspH
General secretion protein H.
 
   
 0.951
ebA1610
Hypothetical protein, INTERPRO suggestion: probable Fimbrial assembly.
 
  
 0.950
gspI
General secretion pathway protein I.
 
  
 0.948
gspD2
General secretory pathway protein D.
  
  
 
0.925
ebA1239
General (Type II) secretion pathway (GSP) D protein.
    
0.911
gspF
General secretion pathway protein F.
 
  
 0.831
gspE
General secretion pathway protein E (Type II traffic warden ATPase); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.824
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.