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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspJGeneral secretion pathway protein J. (223 aa)    
Predicted Functional Partners:
gspK
General secretory pathway protein K.
 
 
 0.988
gspI
General secretion pathway protein I.
 
 
 0.976
gspH
General secretion protein H.
 
   
 0.957
ebA1610
Hypothetical protein, INTERPRO suggestion: probable Fimbrial assembly.
 
  
 0.956
gspD
General (Type II) secretion pathway (GSP) D protein.
 
  
 0.955
gspG
General secretion pathway protein G.
 
 
 0.921
gspJ2
General secretory pathway protein J.
     
  0.900
ebA1607
Hypothetical protein.
     
 0.801
ebA1609
Hypothetical protein.
     
 0.797
gspK2
General secretory pathway protein K.
  
 
 0.792
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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