STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galE1Similar to UDP-glucose 4-epimerase. (327 aa)    
Predicted Functional Partners:
ugd
UDP-glucose dehydrogenase.
 
 0.946
galE
UDP-glucose 4-epimerase, gene: SP1607; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
0.921
epsT
UDP-glucose pyrophosphorylase EpsT.
 
 
 0.921
ebA1630
Predicted polysaccharide biosynthesis protein.
 
  
 0.845
wcaG
Predicted Nucleoside-diphosphate-sugar epimerase.
 
    
0.801
wbiH
Putative undecaprenyl phosphate N-acetylglucosaminyltransferase.
  
  
 0.799
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.748
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.748
rpsJ
30S Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.741
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.737
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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