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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA1666Probable fusion of ABC transporter-type transmembrane and ATP binding protein. (1021 aa)    
Predicted Functional Partners:
ebA1673
Predicted gram-negative bacterial type I secretion protein.
 
 
 0.955
ebA1670
Putative Rotamase (prolyl cis-trans isomerase).
 
  
 0.942
ebA1675
Hypothetical protein.
 
  
 0.921
ebA1664
Probable sigma-N-dependent transcriptional regulator.
 
 
 
 0.838
tolC-2
Outer membrane channel protein.
 
  
 0.709
ebA7184
Hypothetical protein.
 
  
 0.657
ebA791
Probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains.
 
 
 0.634
msbA
Predicted ABC-type multidrug transport system protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
0.633
ebA2229
ABC transporter, transmembrane region.
 
 
0.631
ebA5186
ABC efflux transporter, permease/ATP-binding protein.
 
 
0.630
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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