Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA1688Conserved hypothetical protein. (390 aa)    
Predicted Functional Partners:
c1A29
Protein kinase.
 
  
 0.752
ebA1686
Probable serine/threonine protein kinase.
  
 0.669
ebA4796
Serine/threonine-protein kinase.
 
  
 0.663
ebB46
Conserved hypothetical protein.
 
     0.613
ebB47
Conserved hypothetical protein.
 
     0.575
ebA7008
Conserved hypothetical protein.
 
  
 0.534
ebA1675
Hypothetical protein.
 
     0.507
ebA1673
Predicted gram-negative bacterial type I secretion protein.
  
    0.495
ebA4061
Putative ABC transporter protein,ATPase component.
  
    0.488
ebA1663
Phosphoprotein phosphatase.
 
  
 0.466
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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