STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhPutative glutathione-dependent formaldehyde dehydrogenase. (389 aa)    
Predicted Functional Partners:
ebA1698
Hypothetical protein.
 
    0.886
ebA2139
Hypothetical protein.
 
    0.738
topA
Type I topoisomerase.
  
     0.714
ebA6991
Putative oxidoreductase (related to short-chain alcohol dehydrogenases).
 
  
 0.707
ebA1700
Conserved hypothetical protein,ribonuclease BN falily.
 
     0.607
ebA6987
Hypothetical protein.
  
  
 0.588
ebA5712
Putative esterase/lipase/thioesterase; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.579
bioF
Aminotransferases class-I; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
  
 0.560
ebA6920
Putative maltooligosyltrehalose trehalohydrolase.
 
  
 0.518
ebA6655
ATP-dependent DNA ligase.
 
     0.515
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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