Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA1700Conserved hypothetical protein,ribonuclease BN falily. (317 aa)    
Predicted Functional Partners:
fdh
Putative glutathione-dependent formaldehyde dehydrogenase.
 
     0.606
ebA2146
Probable regulator protein containing CheR-and CheB-like domains.
 
     0.505
ebA6098
Probable Na+/H+ antiporter.
 
   
 0.488
ebA1698
Hypothetical protein.
       0.453
ebA535
Conserved hypothetical protein,predicted Lipocalin-related protein and Bos/Can/Equ allergen family.
 
    0.439
cheB
Protein-glutamate methylesterase; Chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase.
  
     0.436
ebA791
Probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains.
 
   
 0.420
topA
Type I topoisomerase.
  
    0.408
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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