Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilJTwitching motility transmembrane protein PilJ. (713 aa)    
Predicted Functional Partners:
pilL
Pili chemotaxis protein similar PilL.
 
 0.999
pilI
Twitching motility protein PilI.
 
 0.998
pilG
Type IV pilus response regulator PilG.
 
 0.991
pilH
Type IV pilus response regulator PilH.
 
 0.989
ebA2146
Probable regulator protein containing CheR-and CheB-like domains.
 
 
 0.952
ebA2985
Putative diguanylate cyclase/phosphodiesterase domain 2 (EAL).
 
 
 0.910
cheB
Protein-glutamate methylesterase; Chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase.
 
 
 0.763
cheR
Methylase of chemotaxis methyl-accepting protein.
 
 
 0.757
ebA6328
Complex sensory protein with histidine kinase domain.
 
 
 0.751
ebA6051
Putative sensory transduction histidine kinase of highly complex domain structure.
 
 
 0.748
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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