STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA1805HlyD family secretion protein. (473 aa)    
Predicted Functional Partners:
ebA1807
ABC transporter, ATP-binding/permease.
 
 0.988
ebB52
Hypothetical protein.
 
     0.939
ebA1783
Outer membrane protein, ortholog involved in agglutination in some bacteria.
 
 
 0.883
ebA1803
Putative LuxR-family transcriptional regulator.
 
  
 0.850
ebA1795
Hypothetical protein.
 
  
 0.839
ebA1785
Conserved hypothetical protein.
 
  
 0.797
ebA1787
Conserved hypothetical protein.
 
  
 0.761
ebA7181
Putative ABC transporter protein.
  
 0.723
macB
Transmembrane ATP-binding ABC transporter protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.689
tolC
Type I secretion outer membrane efflux protein.
 
 
 0.641
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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