STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aliACyclohexanecarboxylate-CoA ligase. (549 aa)    
Predicted Functional Partners:
badJ
Cyclohexanecarboxyl-CoA dehydrogenase.
 
 
 0.940
badK
Cyclohex-1-ene-1-carboxyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.855
badR
Transcriptional regulator, protein,possibly involved in regulating genes for cyclohexanecarboxylate metabolism.
  
   
 0.723
ebA3471
Similar to transmembrane protein.
  
 0.698
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 
 0.674
ompC
Outer membrane protein (porin), similar to outer membrane porin protein 32 precursor (OMP32).
  
    0.656
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 0.642
badI
2-ketocyclohexanecarboxyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
   
 0.624
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.546
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.528
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.