Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA2212Hypothetical protein. (214 aa)    
Predicted Functional Partners:
ebA2213
Hypothetical protein.
       0.746
ebA2214
Hypothetical protein.
       0.746
ebA2217
Hypothetical protein.
       0.618
ccmF
Cytochrome c-type biogenesis protein CcmF.
       0.618
ebA2226
Hypothetical protein.
       0.618
ebA6946
Putative Phospholipase/Transphosphatidylase.
 
  
 0.531
ebA6969
Hypothetical protein.
 
     0.515
coxC-2
Subunit III of cytochrome c oxidase,also similar to C-terminal domain of long variants of subunit I.
  
     0.503
ebA7011
Hypothetical protein.
 
     0.492
ebB174
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
     0.484
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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