Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA2309Hypothetical protein. (91 aa)    
Predicted Functional Partners:
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 0.726
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.693
ebA2308
Hypothetical protein.
       0.594
ebA2310
Conserved hypothetical protein,predicted prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.485
ebA2305
Probable phospholipase C (plcA).
       0.468
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehyd rase reductase.
  
 0.437
paaE
Probable ring-hydroxylation complex protein 4.
  
 0.437
paaE2
Similar to aerobic phenylacetate degradation protein.
  
 0.437
parE-2
Plasmid stabilization system protein.
       0.437
ebA608
Conserved hypothetical protein.
  
 0.402
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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