Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA2958Conserved hypothetical protein. (382 aa)    
Predicted Functional Partners:
pilQ
Fimbrial type-IV assembly protein PilQ.
 
 
 
 0.949
pilO
Fimbrial type-IV assembly protein PilO.
 
   0.903
pilN
Type IV fimbrial biogenesis protein PilN.
  
 
   0.900
pilM
Type IV fimbrial biogenesis protein PilM.
  
 
   0.899
ebA7252
Hypothetical protein.
  
 
 0.839
ebB250
Conserved hypothetical protein.
  
 
 0.839
smg
Conserved hypothetical protein; Belongs to the Smg family.
 
     0.826
smf
SMF protein, Rossmann fold nucleotide-binding protein involved in DNA uptake.
       0.822
ebA1239
General (Type II) secretion pathway (GSP) D protein.
   
 
 0.789
pilZ
Type IV fimbrial biogenesis protein PilZ.
  
    0.783
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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