STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mucDPutative serine protease MucD; Belongs to the peptidase S1C family. (499 aa)    
Predicted Functional Partners:
degQ
Serine protease DegQ/MucD; Belongs to the peptidase S1C family.
  
  
 
0.905
rseA
Anti sigma-E protein.
  
 
 0.698
ebA2968
Hypothetical protein.
       0.572
ebA791
Probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains.
  
  
 0.565
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.552
ebA5995
Membrane-associated Zn-dependent protease.
 
  
 0.524
lysR-4
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.500
katA
Catalase; Belongs to the catalase family.
   
 0.466
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.462
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
 
 
 0.457
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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