Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mucDPutative serine protease MucD; Belongs to the peptidase S1C family. (499 aa)    
Predicted Functional Partners:
degQ
Serine protease DegQ/MucD; Belongs to the peptidase S1C family.
  
  
 
0.905
rseA
Anti sigma-E protein.
  
 
 0.722
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.667
ebA2968
Hypothetical protein.
       0.572
ebA791
Probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains.
  
  
 0.552
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.523
ebA5995
Membrane-associated Zn-dependent protease.
 
  
 0.516
lysR-4
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.500
rplY
50S Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.484
ebA5423
Conserved hypothetical protein with ankyrin-repeat.
   
 0.459
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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