Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ebA3069Conserved hypothetical protein, probably involved in cell wall turnover. (168 aa)    
Predicted Functional Partners:
ebA7252
Hypothetical protein.
  
 
 0.839
ebB250
Conserved hypothetical protein.
  
 
 0.839
ebA3357
Hypothetical protein.
  
  
 0.785
ebA1239
General (Type II) secretion pathway (GSP) D protein.
   
 
 0.714
pilQ
Fimbrial type-IV assembly protein PilQ.
   
 
 0.714
ebA2689
DNA-binding protein.
   
    0.650
wrbA
Flavoprotein wrbA.
   
  
 0.576
wrbA-2
Flavodoxin-like protein; Belongs to the WrbA family.
   
  
 0.576
dps
DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
  
 0.559
ebB174
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.538
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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