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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCPotential peptidoglycan amidase, C-terminal fragment. (229 aa)    
Predicted Functional Partners:
amiC-2
N-acetylmuramoyl-L-alanine amidase, AMIC precursor protein.
     
  0.900
ebA1863
Hypothetical protein.
  
     0.704
ebA4071
Hypothetical protein.
  
     0.656
ebA6153
Hypothetical protein.
  
     0.632
ebA4108
Hypothetical protein.
 
 
 0.625
ebA3254
Hypothetical protein.
       0.570
ebA2980
Conserved hypothetical protein.
  
     0.558
ebA535
Conserved hypothetical protein,predicted Lipocalin-related protein and Bos/Can/Equ allergen family.
 
     0.550
ebA5598
Hypothetical protein.
  
    0.534
ebA3974
Putative transmembrane protein.
  
   0.529
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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