STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA3296Zn-dependent hydrolase. (320 aa)    
Predicted Functional Partners:
ebA3297
Putative aromatic monooxygenase.
 
    0.917
ebA3298
Conserved hypothetical protein, possible small subunit of monooxygenase.
 
     0.900
ebA3295
Transcriptional regulatory protein.
 
     0.764
ebA2769
Conserved hypothetical protein,predicted Rhodopsin-like G-protein coupled receptor superfamily.
 
      0.549
ebB100
Potential extradiol-cleaving dioxygenase of dihydroxy-substituted aromatic compound.
 
 
 0.547
nagL
Maleylpyruvate isomerase.
 
 
 
 0.537
ebA3300
Potential fumarylacetoacetate hydrolase (extradiol catechol pathway).
 
    0.535
paaR
Probable transcriptional regulator of paa operon.
  
     0.502
ebA2889
Conserved hypothetical protein.
  
    0.448
ebA2036
Putative thioesterase.
  
     0.432
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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