Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA3320Probable two-component sensor. (422 aa)    
Predicted Functional Partners:
colR
DNA-binding response regulator ColR.
 
 
 0.962
ebA6051
Putative sensory transduction histidine kinase of highly complex domain structure.
 
 
 0.923
ebA3314
Predicted PAP2 superfamily protein.
 
   
 0.844
ebA6722
Histidine kinase.
   
 
 0.829
ebA791
Probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains.
  
 
 0.809
ebA6235
DNA-binding response regulator.
 
 
 0.773
ebA598
Conserved hypothetical protein,predicted sulfatase family.
 
     0.742
pilH
Type IV pilus response regulator PilH.
 
 
 0.718
ebB83
Conserved hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
   
 0.683
ebA3993
Conserved hypothetical protein,predicted protein kinase family.
  
     0.679
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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